Upload a data if size is > 2Go (command line) (1/2)

Command line (Terminal) solution

• To establish the connection with the sftp server from your Linux or Mac computer:

  sftp -P 2222 yourlogin@galaxy.pasteur.fr

  or

  sftp -oPort=2222 yourlogin@galaxy.pasteur.fr

• Remark if data are on tars, first connect to it (with your pasteurID password):

  ssh yourlogin@tars.pasteur.fr

  REMARK: Use the galaxy password for the sftp connection

Upload a data if size is > 2Go (command line) (2/2)

Command line (Terminal) solution

• To upload a file on the sftp server:

  sftp>put PathToYourFile

• To upload a directory on the sftp server:
  • On the sftp server create a directory with the same name that the directory you wish to upload:

    sftp>mkdir mydirectory
    sftp>put -r mydirectory

Upload a data if size is > 2Go (Filezilla)

Filezilla solution: You can use filezilla to transfer data from your computer to your Galaxy transfer directory

• Launch filezilla
• Open the site manage: ctrl+s
• Click on new site
  • host: galaxy.pasteur.fr
  • port: 2222
  • Protocol: sftp - ssh File Transfer Protocol
  • Logon Type: Ask for password galaxy password
  • User: yourlogin

Upload a data if size is > 2Go (Filezilla)

Filezilla solution: You can use filezilla to transfer data from your computer to your Galaxy transfer directory

• Launch filezilla
• Open the site manage: ctrl+s
• Click on new site
  • host: galaxy.pasteur.fr
  • port: 2222
  • Protocol: sftp - ssh File Transfer Protocol
  • Logon Type: Ask for password galaxy password
  • User: yourlogin
• Drag'n drop your data from the left windows to the right windows

Upload a data if size is > 2Go (in Galaxy) (1/2)

• Then use the galaxy web interface to transfer the data in your Galaxy library
• Click on your library
• It's possible to create folder to organize your data
• To upload file you transfered in your link directory (from User Directory):

Upload a data if size is > 2Go (in Galaxy) (2/2)

• Then select your data and click on the icon to History