shiny server relevant functions

schnapps(
  localContributionDir = "~/Rstudio/shHubgit/Dummy/",
  defaultValueSingleGene = "CD3g",
  defaultValueMultiGenes =
    "cd3g, cd4, cd8b, ms4a1, TCF4, LILRA2, LYZ, cd79a, bcl11b, IL32, hbb, nkg7,MNDA",
  defaultValueRegExGene = "",
  DEBUG = FALSE,
  DEBUGSAVE = FALSE,
  historyPath = NULL,
  defaultValues = list(),
  port = NULL,
  launch.browser = getOption("shiny.launch.browser", interactive())
)

Arguments

localContributionDir: path to the directory(ies) that contain additional functionality
defaultValueSingleGene: single gene name to used as a default value.
defaultValueMultiGenes: comma separated list of gene names to be used as a default value.
defaultValueRegExGene: regular Expression used for gene selection
DEBUG: TRUE/FALSE whether to show debugging information on the console
DEBUGSAVE: TRUE/FALSE where or not save internal data (very time consuming)
historyPath: location (directory) where history directories and data will be stored.
defaultValues: list of default values to use for inputs
launch.browser: a function to call with the application's URL.

Details

Shiny app for the analysis of single cell data

Examples

# create example data
data("scEx", package = "SCHNAPPs")
save(file = "scEx.Rdata", list = "scEx")
#> Error in save(file = "scEx.Rdata", list = "scEx"): object 'scEx' not found
# use "scEx.Rdata" with load data functionality within the shiny app