shiny server relevant functions

schnappsLite(
  data = "RdataFile",
  localContributionDir = "~/Rstudio/shHubgit/Dummy/",
  defaultValueSingleGene = "CD52",
  defaultValueMultiGenes = "CD52, S100A4, S100A9, S100A8",
  defaultValueRegExGene = "",
  DEBUG = FALSE,
  DEBUGSAVE = FALSE,
  historyPath = NULL,
  maxCells = 3000,
  defaultValues = list(),
  AllowClustering = FALSE
)

Arguments

data: RdataFile data file with scEx, scEx_log, projections
localContributionDir: path to the directory(ies) that contain additional functionality
defaultValueSingleGene: single gene name to used as a default value.
defaultValueMultiGenes: comma separated list of gene names to be used as a default value.
defaultValueRegExGene: regular Expression used for gene selection
DEBUG: TRUE/FALSE whether to show debugging information on the console
DEBUGSAVE: TRUE/FALSE where or not save internal data (very time consuming)
historyPath: location (directory) where history directories and data will be stored.
maxCells: maximal number of cells to use. Used to limit memory usage for server
defaultValues: list of default values to use for inputs
AllowClustering: whether to include functionality to cluster cells.

Details

Shiny app for the analysis of single cell data

Examples

packPath = "schnappsPackage"
# TODO fix:
# schnappsLite(data = paste0(packPath, "/data/scExLite.RData"))